cd-hit (4.8.1-4) unstable; urgency=medium

  * d/watch: fix broken link to github
  * d/control: add myself to uploaders
  * d/t/run-unit-test: disable memory limits in tests (Closes: #992052)
  * Standards-Version: 4.6.0 (routine-update)

 -- Étienne Mollier <emollier@debian.org>  Fri, 20 Aug 2021 10:39:56 +0200

cd-hit (4.8.1-3) unstable; urgency=medium

  * Fix Homepage
    Closes: #975385
  * Standards-Version: 4.5.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Update watch file format version to 4.
  * Set upstream metadata fields: Bug-Database, Bug-Submit.
  * Remove obsolete fields Contact, Name from debian/upstream/metadata (already
    present in machine-readable debian/copyright).

 -- Andreas Tille <tille@debian.org>  Sat, 21 Nov 2020 20:27:41 +0100

cd-hit (4.8.1-2) unstable; urgency=medium

  [ Helmut Grohne ]
  * Fix FTCBFS: Makefile expects a C++ compiler in $CC. (Closes: #932652)

 -- Andreas Tille <tille@debian.org>  Mon, 22 Jul 2019 00:42:22 +0200

cd-hit (4.8.1-1) unstable; urgency=medium

  [ Jelmer Vernooĳ ]
  * Use secure copyright file specification URI.
  * Trim trailing whitespace.

  [ Andreas Tille ]
  * New upstream version
  * debhelper 12
  * Standards-Version: 4.4.0
  * Remove trailing whitespace in debian/rules
  * Do not parse d/changelog
  * Build-Depends: zlib1g-dev

 -- Andreas Tille <tille@debian.org>  Fri, 19 Jul 2019 19:34:25 +0200

cd-hit (4.6.8-2) unstable; urgency=medium

  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1

 -- Andreas Tille <tille@debian.org>  Wed, 19 Sep 2018 14:47:50 +0200

cd-hit (4.6.8-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.
  * Make build reproducible, thanks to Chris Lamb for the patch.
    Closes: #866330

 -- Sascha Steinbiss <satta@debian.org>  Sat, 01 Jul 2017 10:43:07 +0200

cd-hit (4.6.7-1) unstable; urgency=medium

  * New upstream version
    - cd-hit-est and cd-hit-est-2d now can cluster paired end (PE) reads.
    - user can select sub-sequence from the beginning of the sequences for clustering.
    - psi-cd-hit.pl can work with blast+.
    - output cluster file can be sorted by cluster size, in addition to cluster length, which is still the default
    - output fasta file can be sorted by cluster size.
  * upstream/metadata: Added RRID
  * upstream/edam: Crude first entry
  * Team upload.

 -- Steffen Moeller <moeller@debian.org>  Wed, 14 Jun 2017 15:55:31 +0200

cd-hit (4.6.6-2) unstable; urgency=medium

  [ Canberk Koç ]
  * Team upload.
  * Autopkgtest added

  [ Andreas Tille ]
  * Install originally named tools (including '-' to /usr/bin)

 -- Canberk Koç <canberkkoc@gmail.com>  Sun, 14 Aug 2016 14:49:02 +0300

cd-hit (4.6.6-1) unstable; urgency=medium

  * New upstream version
  * Moved from SVN to Git

 -- Andreas Tille <tille@debian.org>  Wed, 03 Aug 2016 22:20:07 +0200

cd-hit (4.6.5-2) unstable; urgency=medium

  * Remove links to scripts that were removed in this version
    Closes: #825582
  * cme fix dpkg-control
  * Better hardening

 -- Andreas Tille <tille@debian.org>  Sat, 28 May 2016 09:24:04 +0200

cd-hit (4.6.5-1) unstable; urgency=medium

  * New upstream version
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Wed, 09 Mar 2016 21:47:21 +0100

cd-hit (4.6.4-1) unstable; urgency=medium

  * New upstream version
  * Adapted d/watch to move from google code to Github
  * Remove redundant remark from author about LaTeX source of doc
  * cme fix dpkg-control
  * Update debian/copyright
  * Some tools do not generate a help2man output any more

 -- Andreas Tille <tille@debian.org>  Fri, 22 Jan 2016 15:31:20 +0100

cd-hit (4.6.1-2012-08-27-2) unstable; urgency=low

  * Take over changes from BioLinux

 -- Andreas Tille <tille@debian.org>  Thu, 15 Aug 2013 21:36:49 +0200

cd-hit (4.6.1-2012-08-27-1biolinux1) precise; urgency=low

  * Rebuild for Precice
  * Add new cdhit-454 to /usr/bin, including help2man manpage
  * Remove dependency on openmpi, as cd-hit doesn't use it at all.
    (It uses the -fopenmp compiler flag; maybe there was some confusion?)

 -- Tim Booth <tbooth@ceh.ac.uk>  Thu, 15 Aug 2013 17:00:41 +0100

cd-hit (4.6.1-2012-08-27-1) unstable; urgency=low

  * New upstream version (adapted patches)
  * debian/control:
     - cme fix dpkg-control
     - use anonscm in Vcs fields

 -- Andreas Tille <tille@debian.org>  Sun, 11 Aug 2013 10:51:30 +0200

cd-hit (4.6-2012-04-25-1) unstable; urgency=low

  * New upstream version incorporating the previous patches as
    well as the LaTeX source of the documentation
  * debian/patches/use-dpkg-buildflags.patch: Make sure hardening
    flags will really propagate
  * debian/{control,rules}: Use mpi version of cd-hit
  * README.Debian: Tell users that we are using mpi and they should
    ask for an alternative if needed
  * debian/*.1, debian/manpages: Deleted in favour of autogenerated
    manpages using help2man; Remark: the manually edited pages were
    slightly better regarding "SEE ALSO" and "AUTHORS" sections but
    it is better to auto-generate the pages to stay with changes of
    future versions
  * debian/rules: Use help2man 2 create manpages whereever possible
  * debian/patches/enable_help2man.patch: Fix some minor issues to
    get less error output in man pages

 -- Andreas Tille <tille@debian.org>  Thu, 26 Apr 2012 07:54:23 +0200

cd-hit (4.5.8-2012-03-24-1) unstable; urgency=low

  [ Charles Plessy ]
  * renamed debian/upstream-metadata.yaml to debian/upstream

  [ Andreas Tille ]
  * New upstream version
  * debian/watch: Fixed to reflect the change on code.google.com
  * debian/control: Standards-Version: 3.9.3 (no changes needed)
  * debian/copyright: Fixed DEP5 and verified using
      cme fix dpkg-copyright
  * debian/patches/gcc-4.7.patch: Enable building with g++-4.7
    Closes: #667134
  * debian/upstream:
     - use BibTeX format to specify author
     - Move DOI+PMID to References
     - Differentiate between URl and eprint
  * debhelper 9 (control+compat)

 -- Andreas Tille <tille@debian.org>  Sun, 22 Apr 2012 18:06:41 +0200

cd-hit (4.5.7-1) unstable; urgency=low

  * Initial release (Closes: #652074)
  * This package is recommended by the package qiime and thus it also
    Closes: #651983

 -- Andreas Tille <tille@debian.org>  Wed, 14 Dec 2011 14:39:32 +0100
